species:   Rhsol
pid:       PID0579
parent:    Rhi-milR-146
paralog:   
locus:     KB317742.1:96320-96429
matures:   ['UGGGCAUGUGAUCAAUAUAGCGGCU', 'CCCUAUUGAAAGACAUCAUGCCUUCA']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317742.1:96320-96429

1 out of bounds
11 alignments
11 proper strand
10 stranded perfect matches

              ***********************                                   **********************                
UGUGCCGUUCACUAUAAUAAUGGGCAUGUGAUCAAUAUAGCGGCUAGAUCAGUUCCAGCUGUGCAAGCCCUAUUGAAAGACAUCAUGCCUUCAAUGAUGAAACAUAAAAU
((((...((((.(((......(((((((((.((...((((.((((.(..((((....))))..).)))))))).....)))).)))))))...))).)))).))))....
--------------------UGGGCAUGUGAUCAAUAUAGCGGCU----------------------------------------------------------------- l=25 a=0 c
-------------------------------------------------------------------CCCUAUUGAAAGACAUCAUGCCUUCA----------------- l=26 a=0 c*
----------------AUAAUGGGCAUGUGAUCAAUA------------------------------------------------------------------------- l=21 a=2 ma
--------------------------------------------------------------------------GAAAGACAUCAUGCCUUCAA---------------- l=20 a=0 ma*

----------------AUAAUGGGCAUGUGAUCAAUA------------------------------------------------------------------------- l=21 a=2 (ma)
-----------------UAAUGGGCAUGUGAUCAAUAUAG---------------------------------------------------------------------- l=23 a=1 
-------------------AUGGGCAUGUGAUCAAUAUAGCGGC------------------------------------------------------------------ l=25 a=1 
--------------------UGGGCAUGUGAUCAAUAUAGCGG------------------------------------------------------------------- l=23 a=2 
--------------------UGGGCAUGUGAUCAAUAUAGCGGC------------------------------------------------------------------ l=24 a=1 
--------------------UGGGCuUGUGAUCAAUAUAGCGGC------------------------------------------------------------------ l=24 a=1 
--------------------------UGUGAUCAAUAUAGCGGCUAGA-------------------------------------------------------------- l=22 a=1 
--------------------------UGUGAUCAAUAUAGCGGCUAGAU------------------------------------------------------------- l=23 a=1 
----------------------------UGAUCAAUAUAGCGGCUAG--------------------------------------------------------------- l=19 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-011
